Basic Information
VIS ID
TVIS30008403
Fusion event
HIV-MORC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
108739640/109020793 (Hg38)
End
108739640/109020793 (Hg38)
Orient
-
Location type
Intronic
Target gene
MORC1
miRNAs that regulate target gene
hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-4423-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p
Nearest miRNA
hsa-let-7g/Upstream/5496677; hsa-mir-12124/Downstream/582035;
Nearest TSS
ENST00000440867/Upstream/66898; ENST00000480826/Downstream/80663;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/431036, chr3-CpG: 28/Downstream/97155
Upstream sequence
ggcagagcttgcagtgagccgagtttgcgtcactgcactccagcctgggcgacacagtgagactctgtctcaaaaaaaaaaaaGATTAGGTATGAATTTT
Downstream sequence
ACTCCAGCCTCCAGGAATTGAGACAGAGGAAGGGAGCAGATTCAGATCACAAATATGGTCAGGTGACAAGGATTGAATGAGGTTGAATCAGGGGTACAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate