VISDB Viral Integration Site DataBase

VIS ID

TVIS30008412

Fusion event

HIV-BTLA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q13.2

Reference genome

Start

End

112196473/112477626 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-630 ; hsa-mir-150-3p ; hsa-mir-1261 ; hsa-mir-4536-5p ; hsa-mir-7-5p ; hsa-mir-4463 ; hsa-mir-1243 ; hsa-mir-5580-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-8485 ; hsa-mir-2113 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-3121-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-6755-3p ; hsa-mir-6879-3p ; hsa-mir-1224-3p ; hsa-mir-500b-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-6883-3p ; hsa-mir-6830-3p ; hsa-mir-3124-3p ; hsa-mir-3162-3p ; hsa-mir-323b-3p ; hsa-mir-6882-5p ; hsa-mir-1264 ; hsa-mir-1247-3p ; hsa-mir-1273g-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3612 ; hsa-mir-3929 ; hsa-mir-4252 ; hsa-mir-4327 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4793-3p ; hsa-mir-485-5p ; hsa-mir-508-5p ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6720-5p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6808-5p ; hsa-mir-6849-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-940

Nearest miRNA

hsa-let-7g/Upstream/364728; hsa-mir-12124/Downstream/259463;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/144067, chr3-CpG: 77/Downstream/83549

Upstream sequence

aaattaggttgccagtctatttgttgttgaattttagtatcttttgatgcacagaagtgtttaatttttatgaagtccaatttatctatttttggtgtta

Downstream sequence

ttgttgattatgcttttgtaatcatagctaagaaaacactgctaaatccaagatcagaaacatttatccctatgttttctcctaagaaatcagagtttta