Basic Information
VIS ID
TVIS30008417
Fusion event
HIV-NDUFB4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
120318413/120599566 (Hg38)
End
120318413/120599566 (Hg38)
Orient
+
Location type
Intronic
Target gene
NDUFB4
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7g/Upstream/203837; hsa-mir-12124/Downstream/450074;
Nearest TSS
ENST00000440867/Upstream/3209; ENST00000496588/Downstream/1384;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2923, chr3-CpG: 62/Downstream/308467
Upstream sequence
agcaaagaaatgaagagagaatggccatagagttagcaggaaatccaagcaggtgtgggcctggaagtcaagtgaagacatgattttcaggagttttcac
Downstream sequence
catgtcagatgctactgagagTGCACTGGACTTTTAGTGATGTCAGAGGAGGAAAACTCTCTTCATAGTGTGTCTTTTGGAACCTCTCAATAACATTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate