Basic Information
VIS ID
TVIS30008418
Fusion event
HIV-GTF2E1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
120472300/120753453 (Hg38)
End
120472300/120753453 (Hg38)
Orient
-
Location type
Intronic
Target gene
GTF2E1
miRNAs that regulate target gene
hsa-mir-361-5p ; hsa-mir-221-3p ; hsa-mir-24-3p ; hsa-let-7f-5p ; hsa-mir-561-3p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-137 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-31-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-548c-3p
Nearest miRNA
hsa-let-7g/Upstream/357724; hsa-mir-12124/Downstream/296187;
Nearest TSS
ENST00000440867/Upstream/10460; ENST00000495504/Downstream/82907;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/156810, chr3-CpG: 62/Downstream/154580
Upstream sequence
TAGATTGTAGTTTTCTTTCTAAGCCCAGTCCTGTACAAATACCCAGTTTCTTGGTTGCTAGAGGAGATTGATAATATTTCTGATCAAGTGATGGAAGTAT
Downstream sequence
TTAATGGCCTTCTACCTCCATTTCTTTTCAATAGTTCTTAGATTGACTTATGGTTTACATAAGCAATTAGGGGATATTCAGAAATTGGATTTGAAGCCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate