Basic Information
VIS ID
TVIS30008419
Fusion event
HIV-HCLS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
121374225/121655378 (Hg38)
End
121374225/121655378 (Hg38)
Orient
+
Location type
Intronic
Target gene
HCLS1
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-let-7g/Upstream/605663; hsa-mir-12124/Downstream/1506416;
Nearest TSS
ENST00000440867/Upstream/11195; ENST00000465664/Downstream/5500;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/109282, chr3-CpG: 42/Downstream/93867
Upstream sequence
TTTAGAAAGGAAATCTGATTAAACTAACCTATATTAACAGGAAACAAAACTAACATCACTGAGCTGCTCAGAAGTGCTAAGTACTGCATTAGACATTGGC
Downstream sequence
TATCCCATTGACCTGTAACTATACATCTTCAGGGTGGCTATTTTTTTTTAAGTTATTTCATTTTTTTATGAGGGTTGCTTGCTCtttttttttttttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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