Basic Information
VIS ID
TVIS30008421
Fusion event
HIV-IQCB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
121528008/121809161 (Hg38)
End
121528008/121809161 (Hg38)
Orient
-
Location type
Intronic
Target gene
IQCB1
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-mir-10a-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-let-7g/Upstream/759446; hsa-mir-12124/Downstream/1352633;
Nearest TSS
ENST00000440867/Upstream/59394; ENST00000465664/Downstream/25831;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/59430, chr3-CpG: 42/Downstream/25812
Upstream sequence
TTTTTTTTTAAGGAGACTTCTCTCTGGGGAGTTAGAGGATACAGTTTCTGGATCTAACTTAGCTATTTATGAGGGACATGATTTTGTTGCctttagtttc
Downstream sequence
ttaatttgtaaaacttgtggttacaggatagtaatatctactagaaatggttgttatccagataaaataaaacaacataagtaGTGTAAGGGCTACAAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate