Basic Information
VIS ID
TVIS30008430
Fusion event
HIV-ACAD9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
128604808/128885965 (Hg38)
End
128604808/128885965 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACAD9
miRNAs that regulate target gene
hsa-mir-615-3p
Nearest miRNA
hsa-let-7g/Upstream/39057; hsa-mir-1224/Downstream/386181;
Nearest TSS
ENST00000440867/Upstream/6319; ENST00000511325/Downstream/11688;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/6105, chr3-CpG: 59/Downstream/107596
Upstream sequence
aattggccgggcatggtggcgggtgcctgtaatcccggctattcaggaggctgaagcaggcgaattgcttgaacccaggaggcagagattgtagtgagcc
Downstream sequence
aacattgcaccactgcactccagcctgggtgacagagtgtgactttgtctaaaaaaaaaaaataaaatatactgtgttcatttgtttaaaaataataaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate