Basic Information
VIS ID
TVIS30008433
Fusion event
HIV-HMCES integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
129018036/129299193 (Hg38)
End
129018036/129299193 (Hg38)
Orient
+
Location type
Intronic
Target gene
HMCES
miRNAs that regulate target gene
hsa-mir-877-3p
Nearest miRNA
hsa-let-7g/Upstream/26950; hsa-mir-1224/Downstream/2686662;
Nearest TSS
ENST00000440867/Upstream/20188; ENST00000511998/Downstream/16199;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19733, chr3-CpG: 207/Downstream/15504
Upstream sequence
gccaagatcgtgccactgcaccccagcctgggtgacagagtgagattccatctcaataaatacatacatacatacatactacaataaatatggcacttta
Downstream sequence
cctcgacaagacctgaagtttgcttgttgcttgtggaagtgagtgttggaagaaatgcatctcatgagttattgtgaagttgtggaaggaaggttatgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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