Basic Information
VIS ID
TVIS30008442
Fusion event
HIV-EPHB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
134722051/135003209 (Hg38)
End
134722051/135003209 (Hg38)
Orient
+
Location type
Intronic
Target gene
EPHB1
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-450b-5p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-4279 ; hsa-mir-6868-3p ; hsa-mir-627-3p ; hsa-mir-3124-3p ; hsa-mir-1248 ; hsa-mir-1237-3p
Nearest miRNA
hsa-let-7g/Upstream/565303; hsa-mir-1224/Downstream/16562667;
Nearest TSS
ENST00000440867/Upstream/150703; ENST00000488992/Downstream/64323;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/206071, chr3-CpG: 47/Downstream/962855
Upstream sequence
ccctctacacactgctttgaatgtgtcccagagattctggtatgttgtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcg
Downstream sequence
ttacgtacccagtagtcattcaggagcaggttgttcagtttccatgtaggtgagcggttttgagtgagattcttaatcctgagttctagtttgattgcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate