VISDB Viral Integration Site DataBase

VIS ID

TVIS30008443

Fusion event

HIV-MSL2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q22.3

Reference genome

Start

End

135893711/136174869 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30d-5p ; hsa-mir-30a-5p ; hsa-mir-578 ; hsa-mir-192-3p ; hsa-mir-664b-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-6853-3p ; hsa-mir-569 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-135b-3p ; hsa-mir-4691-5p ; hsa-mir-6792-3p ; hsa-mir-2276-3p ; hsa-mir-4772-3p ; hsa-mir-885-5p ; hsa-mir-4686 ; hsa-mir-296-3p ; hsa-mir-483-3p ; hsa-mir-136-5p ; hsa-mir-3943 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6807-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4323

Nearest miRNA

hsa-let-7g/Upstream/1736963; hsa-mir-1224/Downstream/15391007;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/208344, chr3-CpG: 200/Downstream/20486

Upstream sequence

TCCAACAAAAAACAAAGATCGGCCTATATACCAGTCTAAAATTTACAGCATCAGAAACCTTAatatgtatatgtatattaaatgtgtatgcataatgtat

Downstream sequence

tcatgtgtaatatatatgtTTAAAATAAGTAAATACATATATACTAAACTCATGATTAGACTAAGCTGGTTTTCATTCATTTATAAAATTTTCTGGGAAT