Basic Information
VIS ID
TVIS30008454
Fusion event
HIV-SLC9A9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
143247592/143528750 (Hg38)
End
143247592/143528750 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC9A9
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7g/Upstream/9090844; hsa-mir-1224/Downstream/8037126;
Nearest TSS
ENST00000440867/Upstream/147412; ENST00000491798/Downstream/169399;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/406754, chr3-CpG: 217/Downstream/442141
Upstream sequence
aattaccttttctataaggtctaaactatcaaatagcagcaatttcatatggtCTGATCAAGTAAAAAGTCCTAGAAGAAGGCAAAGGAGAATAAGCCAC
Downstream sequence
CTTCTATACATTAACTCATGCCTGGGTATTTTTGTCCTTCTAGCTCAAAAGTAAAAAAAAAAAAGTGTGacaaatatgtcttaagtacttactgtgtgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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