Basic Information
VIS ID
TVIS30008457
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
148840233/149122446 (Hg38)
End
148840233/149122446 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/14684540; hsa-mir-1224/Downstream/2443430;
Nearest TSS
ENST00000440867/Upstream/35892; ENST00000494327/Downstream/7138;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/35676, chr3-CpG: 81/Downstream/6965
Nearby gene
HPS3(No orient, 7138)
Upstream sequence
caatccccctgcctcggcctcccaaaatgctaggattacaggcatgagccaccgcgcctggcctataatatatatcaatttttttcttctctgcattgta
Downstream sequence
tttttggtgttgtatctaagaaatttttgtcttactcaaagtcacaaagattttcttttatgttttcttctaagaagttttaggttttacattgtctact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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