VISDB Viral Integration Site DataBase

VIS ID

TVIS30008465

Fusion event

HIV-GMPS integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q25.31

Reference genome

Start

End

155628864/155911075 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-18a-3p ; hsa-mir-23a-3p ; hsa-let-7e-5p ; hsa-mir-5096 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-4781-3p ; hsa-mir-4716-5p ; hsa-mir-6890-5p ; hsa-mir-5680 ; hsa-mir-7977 ; hsa-mir-6089 ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-383-3p ; hsa-mir-4714-5p ; hsa-mir-6821-5p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6778-3p ; hsa-mir-1292-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4438 ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3120-5p ; hsa-mir-136-5p ; hsa-mir-4267 ; hsa-mir-4778-5p ; hsa-mir-5586-5p

Nearest miRNA

hsa-let-7g/Upstream/4345080; hsa-mir-1224/Downstream/3371571;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/39262, chr3-CpG: 29/Downstream/380127

Upstream sequence

CTACAGTTTTAGAGTGCTTTTCCAGTTACCATACATATCTTTGGTATAAATAGCACTTTTAGATAAAGATTTAAGCCAATAGTGTTTATTTTCTTTTTGC

Downstream sequence

TTGTTTTGCTCATTTTGATTTTTCATTTTACCCCGTAGGTTTTACTCAGTGGTGGAGTAGACTCAACAGTTTGTACAGCTTTGCTAAATCGTGCTTTGAA