Basic Information
VIS ID
TVIS30008466
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
GRCh37/hg19
Start
155694782/155976993 (Hg38)
End
155694782/155976993 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/4410998; hsa-mir-1224/Downstream/3305653;
Nearest TSS
ENST00000440867/Upstream/81580; ENST00000478609/Downstream/60708;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/105180, chr3-CpG: 29/Downstream/314209
Nearby gene
GMPS(No orient, 39262)
Upstream sequence
agaagcctttgagtattgggaaacttttcaagttcctggtagcagttacaagttctaaaaaattctaatttcaactttaaattttgaattgtatgattag
Downstream sequence
gaacaaacactgtcagttgttttccttgaagtgatgggctcacttagttcatttttgagagaatgtctaccaaatacccaaatctaaatggcctagttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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