Basic Information
VIS ID
TVIS30008467
Fusion event
HIV-TIPARP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
GRCh37/hg19
Start
156405811/156688022 (Hg38)
End
156405811/156688022 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
TIPARP
miRNAs that regulate target gene
hsa-mir-221-3p ; hsa-mir-26b-5p ; hsa-mir-5692a ; hsa-mir-142-3p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-203b-5p ; hsa-mir-6718-5p ; hsa-mir-222-3p ; hsa-mir-552-5p ; hsa-mir-4799-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4680-5p ; hsa-mir-520f-5p ; hsa-mir-3121-3p
Nearest miRNA
hsa-let-7g/Upstream/5122027; hsa-mir-1224/Downstream/2594624;
Nearest TSS
ENST00000440867/Upstream/6856; ENST00000465728/Downstream/63497;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/12204, chr3-CpG: 116/Downstream/128028
Upstream sequence
CAAGGCCTAATGATCACTTCTTCAAGAATTTATCCCAAGAAATGCATTGTATCTTAAGTTGGGGAACACTTTTACCTACTCAAAAATCTTTTGAGGTATT
Downstream sequence
CAGATAAATCCATGATCTGAGTTTTATGTTAATAGTTTTACAGTGTCATAGTGTGGTAATTAAGTGTAGAATTTTAACCTCTGAggctgggcgcagtggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate