Basic Information
VIS ID
TVIS30008469
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
GRCh37/hg19
Start
156787112/157069323 (Hg38)
End
156787112/157069323 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/5503328; hsa-mir-1224/Downstream/2213323;
Nearest TSS
ENST00000440867/Upstream/148656; ENST00000469196/Downstream/12518;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/242707, chr3-CpG: 41/Downstream/19576
Nearby gene
LINC00880(No orient, 12344)
Upstream sequence
aggctaaggtgggagaatcgcctgaggtgggagcattgcctgagcccaggaggtcgagggtgcagtgagccatgattgtgccactgcactccagtctggg
Downstream sequence
tgacagagcaagaccctgtttcaaaaaaaaaGATTTCTCCTGAGGCCAGAACTAAATAAGCTGCTGTATTTGGTTCAGTCGTTAGTAATTCACATGAATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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