VISDB Viral Integration Site DataBase

VIS ID

TVIS30008471

Fusion event

HIV-SHOX2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q25.32

Reference genome

Start

End

157818316/158100527 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4668-5p ; hsa-mir-5585-3p ; hsa-mir-3613-3p ; hsa-mir-5004-5p ; hsa-mir-4470 ; hsa-mir-183-5p ; hsa-mir-8076 ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-1246 ; hsa-mir-3074-3p ; hsa-mir-6771-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-511-5p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-642b-5p ; hsa-mir-6845-3p ; hsa-mir-3667-3p ; hsa-mir-877-3p ; hsa-mir-5088-3p ; hsa-mir-148a-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3658 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-3653-3p ; hsa-mir-1231 ; hsa-mir-1292-5p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-24-1-5p ; hsa-mir-24-2-5p ; hsa-mir-3128 ; hsa-mir-3129-3p ; hsa-mir-339-3p ; hsa-mir-429 ; hsa-mir-4318 ; hsa-mir-4471 ; hsa-mir-4693-5p ; hsa-mir-4711-3p ; hsa-mir-4720-5p ; hsa-mir-4799-3p ; hsa-mir-5583-5p ; hsa-mir-5588-5p ; hsa-mir-5708 ; hsa-mir-6868-5p ; hsa-mir-8059 ; hsa-mir-8084 ; hsa-mir-892a

Nearest miRNA

hsa-let-7g/Upstream/6534532; hsa-mir-1224/Downstream/1182119;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/2343, chr3-CpG: 34/Downstream/2916

Upstream sequence

GCAAGCAATCTTTGAATTGTATAAAACAGCCTCAAATTCCAAAGTTAAACATGTAAATTAACTACAGAAATAGAAAGATAGATTTTATAGACTTTCACAA

Downstream sequence

GATAGATTACTATTAGTCCTGATTTCATCTTTTCACATAACAGAGTCCCCATGGCCTAAAACTCTGCTTGGTACCTGATACCAACATGATAATGGTTTAG