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TVIS30008473
Basic Information
VIS ID
TVIS30008473
Fusion event
HIV-RSRC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.32
Reference genome
GRCh37/hg19
Start
157866937/158149148 (Hg38)
End
157866937/158149148 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
RSRC1
miRNAs that regulate target gene
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-30a-3p
;
hsa-mir-665
;
hsa-mir-31-5p
;
hsa-mir-7160-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-1827
;
hsa-mir-4649-3p
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-7851-3p
;
hsa-mir-490-3p
;
hsa-mir-335-3p
;
hsa-mir-1305
;
hsa-mir-4433b-5p
;
hsa-mir-664b-3p
;
hsa-mir-579-3p
;
hsa-mir-5696
;
hsa-mir-421
;
hsa-mir-505-3p
;
hsa-mir-7159-5p
;
hsa-mir-4433a-5p
;
hsa-mir-1250-3p
;
hsa-mir-4756-3p
;
hsa-mir-4709-5p
;
hsa-mir-6834-3p
;
hsa-mir-590-3p
;
hsa-mir-513b-3p
;
hsa-mir-4665-5p
;
hsa-mir-1275
;
hsa-mir-7703
;
hsa-mir-5010-5p
;
hsa-mir-4525
;
hsa-mir-7111-5p
;
hsa-mir-6870-5p
;
hsa-mir-5698
;
hsa-mir-4723-5p
;
hsa-mir-625-5p
;
hsa-mir-4252
;
hsa-mir-4793-3p
;
hsa-mir-766-3p
;
hsa-mir-1292-3p
;
hsa-mir-338-3p
;
hsa-mir-4530
;
hsa-mir-1273g-3p
;
hsa-mir-508-5p
;
hsa-mir-4684-5p
;
hsa-mir-664a-5p
;
hsa-mir-4794
;
hsa-mir-3675-3p
;
hsa-mir-522-3p
;
hsa-mir-224-3p
;
hsa-mir-6771-3p
;
hsa-mir-3662
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548am-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-548z
;
hsa-mir-548h-3p
;
hsa-mir-548d-3p
;
hsa-mir-548bb-3p
;
hsa-mir-548ac
;
hsa-mir-10b-5p
Nearest miRNA
hsa-let-7g/Upstream/6583153; hsa-mir-1224/Downstream/1133498;
Nearest TSS
ENST00000440867/Upstream/26994;
ENST00000496268/Downstream/53924;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/38740
,
chr3-CpG: 44/Downstream/421863
Upstream sequence
gctgggattacaggcgtgagccactgcgcccagtcACAAATGTATGCTTTTATGTATTTGCTGTACTTTCGGTTTACTACTTTATAGCTTCTTTACCTAC
Downstream sequence
TACTGAGTACAGTTTATCTTTTCTTTATAGTTTCTTTTTACTCTTAAGTGTTTATAGTTGAGCATACTGAATGATCATCAAAGCTCCTTTGATATTTCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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