Basic Information
VIS ID
TVIS30008474
Fusion event
HIV-IQCJ-SCHIP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.33
Reference genome
GRCh37/hg19
Start
159598221/159880432 (Hg38)
End
159598221/159880432 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
IQCJ-SCHIP1
Nearest miRNA
hsa-let-7g/Upstream/597698; hsa-mir-1224/Downstream/524156;
Nearest TSS
ENST00000440867/Upstream/27440; ENST00000475932/Downstream/8360;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/115198, chr3-CpG: 52/Downstream/108271
Upstream sequence
ACTCTTctggttaacaccttattaatgtccaggtagcaaaagtattttccatatataagacagggagattctactaagtgtttcttgaggtcccttccaa
Downstream sequence
tgctctgtgtattccacatttctatTTATACATTGTGACTTAATGATCCAAGCACTTGATATCTGTTAGAAGACCTAGTTTTTATTTGCATCACTTAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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