Basic Information
VIS ID
TVIS30008480
Fusion event
HIV-LOC105374190 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
164122649/164404861 (Hg38)
End
164122649/164404861 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374190
Nearest miRNA
hsa-let-7g/Upstream/233305; hsa-mir-1224/Downstream/4146993;
Nearest TSS
ENST00000440867/Upstream/929794; ENST00000494915/Downstream/281215;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/400354, chr3-CpG: 23/Downstream/2975278
Nearby gene
MIR1263(No orient, 233305)
Upstream sequence
attttcctttcttgcagtagaacactgatcaatacaATGGAGATATCAAATAAGGAAGCAAGTTTATTTTACATCTTTCATAATTTTTATTTTTGAAAAA
Downstream sequence
GGAGGACTTCTGAGTTTGATATGAGCAAAAATTCTGGCATAGTCAACACCATTTGAGAATACTAGAAGTCAAAGAAGAGGGGAGAGACTTCTTATTTGGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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