Basic Information
VIS ID
TVIS30008491
Fusion event
HIV-NAALADL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
174322587/174604797 (Hg38)
End
174322587/174604797 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/3498038; hsa-mir-1224/Downstream/764743;
Nearest TSS
ENST00000440867/Upstream/163810; ENST00000485853/Downstream/254483;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/163239, chr3-CpG: 133/Downstream/2591652
Nearby gene
NAALADL2(No orient, 254524)
Upstream sequence
ctctggtgatgtaatctagtttttattttttgtgtctccactgtatgttttgttcttttcttttctttctttcttttctttttttttttgagatggaatc
Downstream sequence
tcactctgttgcccaggctggagtgcagtggcatgatcttggctcaccacaacctccatctcccaggttcaagtgattctcttgcctctgtctccctagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate