Basic Information
VIS ID
TVIS30008496
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
181595583/181877795 (Hg38)
End
181595583/181877795 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/5362644; hsa-mir-1224/Downstream/2009005;
Nearest TSS
ENST00000440867/Upstream/165871; ENST00000619662/Downstream/74548;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/150583, chr3-CpG: 70/Downstream/804495
Nearby gene
LINC01206(No orient, 74569)
Upstream sequence
ctgaggcaggtggatggcatgagtccaggagtttgagaccagcctgggcaacatggtgaaaccccatctctacaaaaattacaaaaattagctggatgcg
Downstream sequence
gtggcgcatgcctgtagtcctggctactagtgaggctgaggtgggaggatcacttgagcacaggaggtcgagacgcagtgagctgagctggcaccactgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate