Basic Information
VIS ID
TVIS30008500
Fusion event
HIV-PARL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
183555636/183837848 (Hg38)
End
183555636/183837848 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
PARL
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-25-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-4686 ; hsa-mir-8485 ; hsa-mir-3925-5p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-3152-5p ; hsa-mir-6836-3p ; hsa-mir-452-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-3912-3p
Nearest miRNA
hsa-let-7g/Upstream/7322697; hsa-mir-1224/Downstream/48952;
Nearest TSS
ENST00000440867/Upstream/12254; ENST00000422946/Downstream/4506;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/11832, chr3-CpG: 37/Downstream/46796
Upstream sequence
aaaatgatcaggcttcaactgaaaaatcactcatcatatcaagaaccagaaaaatctcaacttgaataagaaaagacaatTggccgggtgtagtggctca
Downstream sequence
caccagtaatcccaacactttgggaggcccaggtaggaggatcacttgagcccaggagtttgagaccagccttggcaacatagggagaccctgtctctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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