Basic Information
VIS ID
TVIS30008504
Fusion event
HIV-LOC105374264 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
187588706/187870918 (Hg38)
End
187588706/187870918 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
LOC105374264
Nearest miRNA
hsa-let-7g/Upstream/1084141; hsa-mir-28/Downstream/817863;
Nearest TSS
ENST00000440867/Upstream/74663; ENST00000449845/Downstream/75303;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/125981, chr3-CpG: 27/Downstream/282772
Nearby gene
BCL6(No orient, 125193)
Upstream sequence
gaaaaaacagcttaattattatctcgtgaaattgaacatttatggactccatgaccttggaattttatttctctgactatgcttaaaagaaatatttgtg
Downstream sequence
tacatatactagaaaatataaataaggatgttcatagcagtactatgcgtattaatgaacctaacaaaaatcccatcaacaggagaggtgacacataagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate