Basic Information
VIS ID
TVIS30008506
Fusion event
HIV-LOC107986166 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
187748355/188030567 (Hg38)
End
187748355/188030567 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986166
Nearest miRNA
hsa-let-7g/Upstream/1243790; hsa-mir-28/Downstream/658214;
Nearest TSS
ENST00000440867/Upstream/26577; ENST00000449845/Downstream/76529;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/285630, chr3-CpG: 27/Downstream/123123
Nearby gene
LPP-AS2(No orient, 120639)
Upstream sequence
tcggaaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatggcgccactgcactccagcctgggaaacaagagagaa
Downstream sequence
actccgtctccaaaaaaaaaaaaaaGAGGACACTGTTTTTAATATTTGTGTTTGTTGGCAAGAATAAATGAATGACCTACATTTGTCTTTGGCAATAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate