VISDB Viral Integration Site DataBase

VIS ID

TVIS30008507

Fusion event

HIV-LPP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q28

Reference genome

Start

End

188062871/188345083 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-142-3p ; hsa-mir-758-5p ; hsa-mir-3190-3p ; hsa-mir-548aw ; hsa-mir-6079 ; hsa-mir-4762-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4452 ; hsa-mir-376a-5p ; hsa-mir-3192-3p ; hsa-mir-4684-3p ; hsa-mir-656-5p ; hsa-mir-4502 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-491-3p ; hsa-mir-7156-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4729 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-4752 ; hsa-mir-620 ; hsa-mir-3911 ; hsa-mir-1270 ; hsa-mir-7847-3p ; hsa-mir-4697-3p ; hsa-mir-4683 ; hsa-mir-4289 ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-511-3p ; hsa-mir-6782-5p ; hsa-mir-3936 ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-3174 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-627-3p ; hsa-mir-942-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6726-3p ; hsa-mir-4294 ; hsa-mir-130b-5p ; hsa-mir-6812-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-15a-3p ; hsa-mir-6888-5p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-1265 ; hsa-mir-191-5p ; hsa-mir-2392 ; hsa-mir-4327 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4740-3p ; hsa-mir-4742-5p ; hsa-mir-5093 ; hsa-mir-5186 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-7846-3p ; hsa-mir-1827 ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-2052 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4666a-3p ; hsa-mir-4709-3p ; hsa-mir-4722-5p ; hsa-mir-485-5p ; hsa-mir-665 ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7849-3p ; hsa-mir-940

Nearest miRNA

hsa-let-7g/Upstream/1558306; hsa-mir-28/Downstream/343698;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/190517, chr3-CpG: 25/Downstream/602403

Upstream sequence

GAGATCagaatgtcaaagccagaggggacttcacgaagtaatctaaacaaattatttcatgtcacagatggagattttagtgtctgggagggaatctgat

Downstream sequence

ttgtctaaagtgtttttgactgatcttggactagaattcttctgactACATAGTTGTATCTTTAAGTAGAGAAATCTTTTTCTATAAACTATCCTTTCAC