Basic Information
VIS ID
TVIS30008509
Fusion event
HIV-TPRG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
189036727/189318938 (Hg38)
End
189036727/189318938 (Hg38)
Orient
+
Location type
Intronic
Target gene
TPRG1
miRNAs that regulate target gene
hsa-mir-145-5p
Nearest miRNA
hsa-let-7g/Upstream/630072; hsa-mir-3137/Downstream/510984;
Nearest TSS
ENST00000440867/Upstream/9044; ENST00000486398/Downstream/312478;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/371175, chr3-CpG: 99/Downstream/801353
Upstream sequence
TTTGCAAATGAGGAACATGAATTCTTCCCTAAATATCAGaattttaaaactaaattttctaaaaattagaattttataattCCTGCTCATAACAGCAATG
Downstream sequence
TTAtaaagagaggacttcaggagttaagtcaggagacctgagtccaagcccttgctcaatcatttactagttatttggtattgggtagatccctgtaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate