Basic Information
VIS ID
TVIS30008514
Fusion event
HIV-DLG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
196864129/197137258 (Hg38)
End
196864129/197137258 (Hg38)
Orient
-
Location type
Intronic
Target gene
DLG1
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-218-5p ; hsa-mir-9-3p
Nearest miRNA
hsa-let-7g/Upstream/1254863; hsa-mir-4797/Downstream/156620;
Nearest TSS
ENST00000440867/Upstream/51600; ENST00000414529/Downstream/5541;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/106755, chr3-CpG: 115/Downstream/160298
Nearest cancer related gene
DLG1(TSG, No orient, 0)
Upstream sequence
TCCCATAGCTTCAATATCAGATAATTTCTCAGCTCTCCATTCCTTTTTCATTTGTTGACATCCTCCCTCTTCCATGAAGCCACATATTGAAACTACTATT
Downstream sequence
TCCATTTATCCTCAAGCCATCAATGTTTTAAAAATTCAGCAATCACATCTTAACAGTCCTTTACTGCAGATGTAACTGCTCATAATACATATTATAAACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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