Basic Information
VIS ID
TVIS30008521
Fusion event
HIV-ABCA11P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
427248/433459 (Hg38)
End
427248/433459 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ABCA11P
Nearest miRNA
hsa-mir-571/Upstream/83207; hsa-mir-12113/Downstream/1552925;
Nearest TSS
ENST00000502981/Upstream/16922; ENST00000514953/Downstream/40592;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/46849, chr4-CpG: 33/Downstream/40223
Upstream sequence
ttagaacagcccctaaattacatctatgccttagtttcttcgaagtcctatattagagaccctttctACATGCAAACCTAGTATTATACCCAGAGGTTAC
Downstream sequence
CAAATTAACCCGGTACATAAAATCGCTGACTCAATTTCAAGAGGCCATCCAGGAGTTTGGACAAACAATTCTGAGTTTGACCCCCACTCCAACAACCCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate