Basic Information
VIS ID
TVIS30008524
Fusion event
HIV-LOC105374340 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
835975/842187 (Hg38)
End
835975/842187 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374340
Nearest miRNA
hsa-mir-571/Upstream/491935; hsa-mir-12113/Downstream/1144197;
Nearest TSS
ENST00000502981/Upstream/4963; ENST00000504850/Downstream/9486;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/7615, chr4-CpG: 24/Downstream/5675
Nearby gene
GAK(No orient, 7090)
Upstream sequence
tgactatctttaaggagtccatgtttttgtcctctgttgtgttaccagcaacatctgtttcagtttcacaggtccctccagggtttgtgacgtgcagtgt
Downstream sequence
atctcatctccaccagcctctgagtaacacacacctctgtaaattaagaagctcatgataatttacttctaggtatgccataagccccaccatgcattgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate