Basic Information
VIS ID
TVIS30008539
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3288040/3286313 (Hg38)
End
3288040/3286313 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4800/Upstream/1036157; hsa-mir-12113/Downstream/2636962;
Nearest TSS
ENST00000502981/Upstream/37154; ENST00000502947/Downstream/6715;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/32865, chr4-CpG: 150/Downstream/5674
Nearby gene
RGS12(No orient, 27834)
Upstream sequence
CCAGGAGAGGCCACTCGGCCACCCTAAGGGCAGGTCTTCTGCCCCAGGCCGCGTGTGGTTTCTTTCGACACACTGAGGAAGCCTTTCTCCTGAGATCACC
Downstream sequence
AAATGCAGCCTGCCCGGTTTCTGTTCCCCATTACTGCGTATGCGGTGGGCAAACCTCCTCCGGCCCTGAAAGCTCCTGGCTGCCTGGGGAttttctgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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