Basic Information
VIS ID
TVIS30008540
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
4236436/4234709 (Hg38)
End
4236436/4234709 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4800/Upstream/1984553; hsa-mir-12113/Downstream/1688566;
Nearest TSS
ENST00000502981/Upstream/7820; ENST00000502918/Downstream/13503;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/6597, chr4-CpG: 55/Downstream/13330
Nearby gene
TMEM128(No orient, 833)
Upstream sequence
AATGTGTGAAGGCTGACACTGGGGCACTCTCCACCCAAGCTCCCTCCAGGGAGTCTGATCCAAATGCCCTACCTTCCAGGGCTGCAGCCTCAGTTGTACC
Downstream sequence
AGACCCTCACATCACTGCCTGATTAATCACTGCCTGACTAGGCTGCCTGATTGTGGCCTTTGCCTGGCCTTGCTCCCTATTTTAAATGACACTCTCGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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