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TVIS30008544
Basic Information
VIS ID
TVIS30008544
Fusion event
HIV-KIAA0232 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
6810396/6808669 (Hg38)
End
6810396/6808669 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4A
Target gene
KIAA0232
miRNAs that regulate target gene
hsa-mir-375
;
hsa-mir-26b-5p
;
hsa-mir-106b-3p
;
hsa-mir-125a-5p
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-20b-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-3609
;
hsa-mir-548ah-5p
;
hsa-mir-4796-3p
;
hsa-mir-152-3p
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-3689f
;
hsa-mir-3689e
;
hsa-mir-3689b-5p
;
hsa-mir-3689a-5p
;
hsa-mir-142-3p
;
hsa-mir-6073
;
hsa-mir-190a-5p
;
hsa-mir-190b
;
hsa-mir-20b-3p
;
hsa-mir-1208
;
hsa-mir-6760-3p
;
hsa-mir-8062
;
hsa-mir-8079
;
hsa-mir-1245a
;
hsa-mir-1183
;
hsa-mir-1224-3p
;
hsa-mir-4783-5p
Nearest miRNA
hsa-mir-378d-1/Upstream/885341; hsa-mir-12113/Downstream/501781;
Nearest TSS
ENST00000502981/Upstream/25929;
ENST00000503069/Downstream/47130;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/25128
,
chr4-CpG: 178/Downstream/100539
Upstream sequence
TAAAGGAAAATCCTGAGAGAGTCATGATTGTCTCGATATCACTGACACCAGGCACAGTGCCTTGTACACAAGAAACCTCTAGTACATGGGATCGTGAGAG
Downstream sequence
AATGAGTTAAAATTCCTATGTTAGTTAGTCCCTGCCTGTGGACTCAGAGTGTGATCTGAGTTGGTTTTTTCTCCCACCTGCTAGTATTATGAATATCATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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