Basic Information
VIS ID
TVIS30008545
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
10958985/10957361 (Hg38)
End
10958985/10957361 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-3138/Upstream/878669; hsa-mir-12113/Downstream/411466;
Nearest TSS
ENST00000502981/Upstream/219789; ENST00000515343/Downstream/471236;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/495296, chr4-CpG: 74/Downstream/411309
Nearby gene
CLNK(No orient, 272599)
Upstream sequence
AACGCCTCTGCCTGCAAAAACTGTCTGTGGAAGGTCATTAGCCAATTGTAGATGCATCTCTGAATTTTCAGCAAAGCAtctctctctctctctctctgcc
Downstream sequence
tttctctctctctctctgcctgtctctctctgtctctcacacgcacacacacacatacagaaacacataccctcatacacacTTGAAGTTACTATAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate