Basic Information
VIS ID
TVIS30008551
Fusion event
HIV-LOC105374505 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
16404068/16402445 (Hg38)
End
16404068/16402445 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374505
Nearest miRNA
hsa-mir-12113/Upstream/2774488; hsa-mir-12115/Downstream/4125830;
Nearest TSS
ENST00000502981/Upstream/247; ENST00000511148/Downstream/104782;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/41302, chr4-CpG: 79/Downstream/1109241
Nearby gene
LDB2(No orient, 99089)
Upstream sequence
Cttttttttaatttttttattttattttatttttttattttattattattatactttaagttttagggtaatgtgcacaatgtgcaggtttgttacatgt
Downstream sequence
ctatacctgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatatctcctaatgctatccctcccccctcccccctccccacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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