Basic Information
VIS ID
TVIS30008552
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
19734273/19732650 (Hg38)
End
19734273/19732650 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/6104693; hsa-mir-12115/Downstream/795625;
Nearest TSS
ENST00000502981/Upstream/275656; ENST00000508824/Downstream/21941;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1710000, chr4-CpG: 284/Downstream/519003
Nearby gene
SLIT2(No orient, 519255)
Nearest cancer related gene
SLIT2(TSG, No orient, 519255)
Upstream sequence
ttaaggagattttgggctgagatgatggggtttcttagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaatac
Downstream sequence
cctttatttccttctcctgcctgattgccctggccagaacttccaacactgtgttgaataggagtggtgagagagggcatccctgtcttgtgccagtttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate