Basic Information
VIS ID
TVIS30008553
Fusion event
HIV-LOC105374511 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
19920545/19918922 (Hg38)
End
19920545/19918922 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374511
Nearest miRNA
hsa-mir-12113/Upstream/6290965; hsa-mir-12115/Downstream/609353;
Nearest TSS
ENST00000502981/Upstream/164331; ENST00000508824/Downstream/334338;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1896272, chr4-CpG: 284/Downstream/332731
Nearby gene
SLIT2(No orient, 332983)
Upstream sequence
ccctctacacactgctttaaatgtgtcccagagattctggtatgttgtgtctttgttctcattgggttcaaagaacatctttatttctgcattcatttcg
Downstream sequence
ttacgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttaagcggttttgagtgagtttgttaatcctgagttctagtttgattgcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate