Basic Information
VIS ID
TVIS30008558
Fusion event
HIV-LOC102723733 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
25896015/25894393 (Hg38)
End
25896015/25894393 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC102723733
Nearest miRNA
hsa-mir-12113/Upstream/1374103; hsa-mir-1243/Downstream/2925189;
Nearest TSS
ENST00000502981/Upstream/24843; ENST00000522137/Downstream/19513;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30639, chr4-CpG: 61/Downstream/19337
Nearby gene
SMIM20(No orient, 19799)
Upstream sequence
tctctactaaaaatccaaaaattagccaggcttggtggtgggtgcctgtaatctgagctacttggaggctgaggcaggaaaatcgtttggacccaggagg
Downstream sequence
cggagttgcagtgagccgagatcatgccactgcactccagcctggatgacaagagagagaatccatcttaaataataataataataataataatgatgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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