Basic Information
VIS ID
TVIS30008562
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
31633787/31632165 (Hg38)
End
31633787/31632165 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/2812497; hsa-mir-1243/Downstream/4794201;
Nearest TSS
ENST00000502981/Upstream/125499; ENST00000513211/Downstream/365232;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/908945, chr4-CpG: 100/Downstream/4611844
Upstream sequence
AGATTgttcacacctataatcccagcaccttgggatgccaaggtgggaggactgcctgagctcaggagttcaagaccagcctgggcaacatagcaggacc
Downstream sequence
ttgtctcaaccaaaaatacaaaaattagccaggcacggtggattgcgcctgtagtcccaactactaggtaggctgaggtggggagatggcttgagtctca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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