Basic Information
VIS ID
TVIS30008570
Fusion event
HIV-MIR1273H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39296564/39294944 (Hg38)
End
39296564/39294944 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR1273H
Nearest miRNA
hsa-mir-12113/Upstream/426817; hsa-mir-1243/Downstream/116966;
Nearest TSS
ENST00000502981/Upstream/2809; ENST00000257408/Downstream/955;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/112339, chr4-CpG: 48/Downstream/71084
Upstream sequence
aatacaaaaattagccggacacggtggcgtgcgcctataatcccagctactcaggaggctgaggtgggagaatcacttaaacccggaggtggaggatgca
Downstream sequence
gtgagcagagatcgcatcactgcattccagcctgggtgacagagtgtgaccttgtcttaaaaaagaataaaaagaagaaTCCATAAAGTGTACTTAATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate