Basic Information
VIS ID
TVIS30008575
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
43136439/43134422 (Hg38)
End
43136439/43134422 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2632303; hsa-mir-1243/Downstream/4518247;
Nearest TSS
ENST00000502981/Upstream/555; ENST00000507639/Downstream/358121;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/476889, chr4-CpG: 174/Downstream/1312947
Nearby gene
GRXCR1(No orient, 103764)
Upstream sequence
ATTGTTGTTACTTTGTGATCATATTGATACTCAAATTCAACTATTAATTACGAACTATTAGTGCAGTTTAAGAGTTTCAGCCTTGTTTTAAAATCACATT
Downstream sequence
TTTCCTATAGTCATTTTAGCCTTTGACGAAGATTTATTCTTCTTTTAAAATGAAGTCATGTTAACTAATTAATTACTGTAACTCTTTAGGTGATTCTGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate