Basic Information
VIS ID
TVIS30008578
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44035830/44033813 (Hg38)
End
44035830/44033813 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3531694; hsa-mir-1243/Downstream/3618856;
Nearest TSS
ENST00000502981/Upstream/16751; ENST00000513775/Downstream/413800;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1376280, chr4-CpG: 174/Downstream/413556
Upstream sequence
ggaagggacaatggaagaaactgtaaggaaaagtcagttgggtaggagaaaaTGGATTTGGTAGGGAATACATAGATAGCTTTGGAAAGTTGCCTGTGGC
Downstream sequence
TACCATAACAAGTGTTACAAGCAGGGCACTGATGTTGGAATATGATGTGGGTGCATTCCATCCTTTAAGCTAAAATGAAGTGAATATAGTCACGTCCAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate