Basic Information
VIS ID
TVIS30008579
Fusion event
HIV-CORIN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p12
Reference genome
GRCh37/hg19
Start
47691451/47689434 (Hg38)
End
47691451/47689434 (Hg38)
Orient
+
Location type
Intronic
Target gene
CORIN
Nearest miRNA
hsa-mir-12113/Upstream/36691; hsa-mir-1243/Downstream/5023248;
Nearest TSS
ENST00000502981/Upstream/27574; ENST00000634948/Downstream/100826;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/225632, chr4-CpG: 18/Downstream/16992
Upstream sequence
gaagaaactgaggcacagagaggttgagtaacttgcctaagttatcagaggcaggaaatggtaagatcgaaacctaagcagcctgactcaagaatttata
Downstream sequence
gtagtcattactacaccgtattACACTCGGTGTAATTAGATAGCCACCATCCTCAAAAATAAGTCAACCAATTTTACCCAAAATTCACAGAAAATGATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate