Basic Information
VIS ID
TVIS30008580
Fusion event
HIV-FIP1L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
54306554/53440387 (Hg38)
End
54306554/53440387 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
FIP1L1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-877-3p
Nearest miRNA
hsa-mir-12113/Upstream/727640; hsa-mir-1243/Downstream/7482232;
Nearest TSS
ENST00000502981/Upstream/12321; ENST00000511055/Downstream/1866;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/62157, chr4-CpG: 82/Downstream/623687
Nearest cancer related gene
FIP1L1(OG, No orient, 0)
Upstream sequence
GGCATTTGATAATTGTGTGTGCATAAGTGTGCTTTTTAACTGATGTCTAACTTTGTGATTACTAGTGGGGGAAACCTTGTTATCAAGTTGTTAGACTGGG
Downstream sequence
TTTTCATCAAGGAAGTTGGATGTTATACTCGAATTGTTAGTCCTCTACGAGAAAACAGAATGGTTCTCTTGAGTGAATAAGCCAGGATAATGAGGCGAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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