VISDB Viral Integration Site DataBase

VIS ID

TVIS30008582

Fusion event

HIV-CEP135 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q12

Reference genome

Start

End

56830621/55964455 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5010-3p ; hsa-mir-592 ; hsa-mir-3912-5p ; hsa-mir-4669 ; hsa-mir-3657 ; hsa-mir-4650-3p ; hsa-mir-4716-5p ; hsa-mir-4257 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7c-5p ; hsa-mir-4477a ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-6837-3p ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-497-3p ; hsa-mir-5089-5p ; hsa-mir-6842-3p ; hsa-mir-4279 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5571-5p ; hsa-mir-4726-3p ; hsa-mir-466 ; hsa-mir-4699-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-1278 ; hsa-mir-1183 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-6507-5p ; hsa-mir-361-3p

Nearest miRNA

hsa-mir-12113/Upstream/3251708; hsa-mir-1243/Downstream/4958164;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/15110, chr4-CpG: 80/Downstream/84501

Upstream sequence

CTAGAAATAAAACCAATGAAAAGCTTATTGCTCATTTAAATATTCAGGTAATGGCTTTTATAATTATTTCACTGAGTGTATATAATGGTGTTTATAATAA

Downstream sequence

ACACTATATGTTTATAATGGTCTATGGGTTTGTAAAAGTGGCAGGAGTTGTTCACTGAGGTATTATTTGCAATGGGAAaaatttgatagaaccatagtat