Basic Information
VIS ID
TVIS30008584
Fusion event
HIV-AASDH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
57210918/56344752 (Hg38)
End
57210918/56344752 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
AASDH
miRNAs that regulate target gene
hsa-mir-10b-5p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-95-5p ; hsa-mir-605-5p
Nearest miRNA
hsa-mir-12113/Upstream/3632005; hsa-mir-1243/Downstream/4577867;
Nearest TSS
ENST00000502981/Upstream/28089; ENST00000602927/Downstream/39547;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/28771, chr4-CpG: 33/Downstream/42550
Upstream sequence
ATCTTCGTCATTTTTTTCTACTGTCAAGATGATAATCCTAAATTCTTTAATTCCAAAACTCTGAGTAGCACACTTATTTGTGGTAAATTTGGTAATGAAG
Downstream sequence
TTAAAAAGGTCTTAAGATATTAAGACTTAATTAATGCTTTATTCTTCCCAGACCACACAAGCTTGGGAAATAGTTAATACCTGTTCCAAGGCTCAACTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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