Basic Information
VIS ID
TVIS30008585
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
58967634/58101468 (Hg38)
End
58967634/58101468 (Hg38)
Orient
+
Fragile sites / regions
FRA4B
Nearest miRNA
hsa-mir-12113/Upstream/5388721; hsa-mir-1243/Downstream/2821151;
Nearest TSS
ENST00000502981/Upstream/381433; ENST00000513836/Downstream/434860;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/905519, chr4-CpG: 222/Downstream/3098697
Nearby gene
SRIP1(+1679) ;
Upstream sequence
cacagtctgaatttgttgcacagtcctatcctctgggactgactcaaagTAGCCCAATACATGGTCATGCTTAATATGTAtaaatataaaatctgttaac
Downstream sequence
ttcggaagtcaaagactgttgtgcttccctaatcgtggtagggaatgaatgacgcagaaacttttactttggcatgaacctgatgattgaacctctaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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