Basic Information
VIS ID
TVIS30008593
Fusion event
HIV-ANKRD17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
73978389/73112672 (Hg38)
End
73978389/73112672 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKRD17
miRNAs that regulate target gene
hsa-mir-23b-3p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-424-5p ; hsa-mir-186-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-549a ; hsa-mir-4699-3p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-885-5p ; hsa-mir-6504-3p
Nearest miRNA
hsa-mir-12113/Upstream/6835744; hsa-mir-1243/Downstream/3460896;
Nearest TSS
ENST00000502981/Upstream/8592; ENST00000502790/Downstream/41263;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/42739, chr4-CpG: 62/Downstream/146016
Upstream sequence
AGAAAATAGTATTTTCAAATTTAAATTAGAATAAAGTACTTCAAATGATTCATATTAATGTAGGACAAAATGTAGAACTTAATAAAGAAAGCAAGTATAG
Downstream sequence
TAAAAAAGAATGTAGCTAACAAGTCAAAAAACGCATATGCATAATTATCACTGCATCTCCTTTATAAATTTAAATAGTAGATGTTAAATTTTATAGCATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate