Basic Information
VIS ID
TVIS30008598
Fusion event
HIV-LOC101928893 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
79654137/78732983 (Hg38)
End
79654137/78732983 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928893
Nearest miRNA
hsa-mir-12113/Upstream/2157357; hsa-mir-1243/Downstream/4020354;
Nearest TSS
ENST00000502981/Upstream/86766; ENST00000515075/Downstream/42990;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/180960, chr4-CpG: 108/Downstream/42570
Nearby gene
BMP2K(No orient, 43395)
Upstream sequence
GTTAATTAGCTAAATGTACACTTGCTAGCCACTTGAGCAAATGAGTATGAGGCAGCTCTATCTTGTCAAGGCTGGAAGGAATTTTACAACTGGTAGTATA
Downstream sequence
CAATTCCTTCACTTGCCAGAGTTCTACTATTGGTGCAGGTCCCAACTGTCATCTGGTTTAACTGCTCATCTGCAGCTTCCATTGTCTCTGATGACACCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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