Basic Information
VIS ID
TVIS30008603
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
81089963/80168809 (Hg38)
End
81089963/80168809 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3593183; hsa-mir-1243/Downstream/2584528;
Nearest TSS
ENST00000502981/Upstream/43355; ENST00000506547/Downstream/15070;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/95553, chr4-CpG: 70/Downstream/14798
Nearby gene
PRDM8(No orient, 16461)
Nearest cancer related gene
PRDM8(OG, No orient, 16461)
Upstream sequence
tcttctaagaacattcagtttttaggacttcgatccattttgagttaatttttgtgtatggtatgaggtaagggtttagcttcattcttttgcctgtggc
Downstream sequence
tatccaattgtcccagcacaatttgtggggattattctttccccattaatgttttaggaccctgtgcacaaaatgagttggccatggagatatgggttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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